Dense prediction tasks such as segmentation and detection of pathological entities hold crucial clinical value in the digital pathology workflow. However, obtaining dense annotations on large cohorts is usually tedious and expensive. Contrastive learning (CL) is thus often employed to leverage large volumes of unlabeled data to pre-train the backbone network. To boost CL for dense prediction, some studies have proposed variations of dense matching objectives in pre-training. However, our analysis shows that employing existing dense matching strategies on histopathology images enforces invariance among incorrect pairs of dense features and, thus, is imprecise. To address this, we propose a precise location-based matching mechanism that utilizes the overlapping information between geometric transformations to precisely match regions in two augmentations. Extensive experiments on two pretraining datasets (TCGA-BRCA, NCT-CRC-HE) and three downstream datasets (GlaS, CRAG, BCSS) highlight the superiority of our method in semantic and instance segmentation tasks. Our method outperforms previous dense matching methods by up to 7.2 % in average precision for detection and 5.6 % in average precision for instance segmentation tasks. Additionally, by using our matching mechanism in the three popular contrastive learning frameworks, MoCo-v2, VICRegL and ConCL, the average precision in detection is improved by 0.7 % to 5.2 % and the average precision in segmentation is improved by 0.7 % to 4.0 %, demonstrating its generalizability.
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深度学习方法为多级医学图像细分实现了令人印象深刻的表现。但是,它们的编码不同类别(例如遏制和排除)之间拓扑相互作用的能力受到限制。这些约束自然出现在生物医学图像中,对于提高分割质量至关重要。在本文中,我们介绍了一个新型的拓扑交互模块,将拓扑相互作用编码为深神经网络。该实施完全基于卷积,因此非常有效。这使我们有能力将约束结合到端到端培训中,并丰富神经网络的功能表示。该方法的功效在不同类型的相互作用上得到了验证。我们还证明了该方法在2D和3D设置以及跨越CT和超声之类的不同模式中的专有和公共挑战数据集上的普遍性。代码可在以下网址找到:https://github.com/topoxlab/topointeraction
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在手术视频中自动识别外科手术阶段是手术工作流程分析中的一项基本任务。在本报告中,我们提出了一种基于变压器的方法,该方法利用了2阶段推理管道的校准置信度得分,该方法根据校准的置信度水平动态切换基线模型和单独训练的过渡模型。我们的方法的表现优于Cholec80数据集上的基线模型,并且可以应用于各种动作分割方法。
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在这项工作中,我们提出了一种新型视觉注意力驱动的变压器框架Radiotransformer,它利用放射科医生的凝视模式并将其视觉认知行为模拟用于胸部X光片的疾病诊断。诸如放射科医生等领域专家依靠视觉信息进行医学图像解释。另一方面,即使视觉解释具有挑战性,深度神经网络在类似任务中也表现出了巨大的希望。眼睛凝视的跟踪已用于捕获域专家的观看行为,从而对视觉搜索的复杂性提供了洞察力。但是,深度学习框架,即使是依靠注意力机制的框架,也不会利用这种丰富的领域信息。 Radiotransformer通过从放射科医生的视觉搜索模式中学习,在级联的全球 - 焦点变压器框架中编码为“人类视觉注意区域”,从而填补了这一关键差距。总体“全局”图像特征和更详细的“本地”特征分别由拟议的全局和焦点模块捕获。我们通过实验验证了学生教师方法对8个数据集的功效,这些数据集涉及不同的疾病分类任务,在推理阶段无法使用眼睛凝视数据。代码:https://github.com/bmi-imaginelab/radiotransformer。
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Information overloading requires the need for summarizers to extract salient information from the text. Currently, there is an overload of dialogue data due to the rise of virtual communication platforms. The rise of Covid-19 has led people to rely on online communication platforms like Zoom, Slack, Microsoft Teams, Discord, etc. to conduct their company meetings. Instead of going through the entire meeting transcripts, people can use meeting summarizers to select useful data. Nevertheless, there is a lack of comprehensive surveys in the field of meeting summarizers. In this survey, we aim to cover recent meeting summarization techniques. Our survey offers a general overview of text summarization along with datasets and evaluation metrics for meeting summarization. We also provide the performance of each summarizer on a leaderboard. We conclude our survey with different challenges in this domain and potential research opportunities for future researchers.
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In molecular research, simulation \& design of molecules are key areas with significant implications for drug development, material science, and other fields. Current classical computational power falls inadequate to simulate any more than small molecules, let alone protein chains on hundreds of peptide. Therefore these experiment are done physically in wet-lab, but it takes a lot of time \& not possible to examine every molecule due to the size of the search area, tens of billions of dollars are spent every year in these research experiments. Molecule simulation \& design has lately advanced significantly by machine learning models, A fresh perspective on the issue of chemical synthesis is provided by deep generative models for graph-structured data. By optimising differentiable models that produce molecular graphs directly, it is feasible to avoid costly search techniques in the discrete and huge space of chemical structures. But these models also suffer from computational limitations when dimensions become huge and consume huge amount of resources. Quantum Generative machine learning in recent years have shown some empirical results promising significant advantages over classical counterparts.
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It is known that neural networks have the problem of being over-confident when directly using the output label distribution to generate uncertainty measures. Existing methods mainly resolve this issue by retraining the entire model to impose the uncertainty quantification capability so that the learned model can achieve desired performance in accuracy and uncertainty prediction simultaneously. However, training the model from scratch is computationally expensive and may not be feasible in many situations. In this work, we consider a more practical post-hoc uncertainty learning setting, where a well-trained base model is given, and we focus on the uncertainty quantification task at the second stage of training. We propose a novel Bayesian meta-model to augment pre-trained models with better uncertainty quantification abilities, which is effective and computationally efficient. Our proposed method requires no additional training data and is flexible enough to quantify different uncertainties and easily adapt to different application settings, including out-of-domain data detection, misclassification detection, and trustworthy transfer learning. We demonstrate our proposed meta-model approach's flexibility and superior empirical performance on these applications over multiple representative image classification benchmarks.
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In consequential decision-making applications, mitigating unwanted biases in machine learning models that yield systematic disadvantage to members of groups delineated by sensitive attributes such as race and gender is one key intervention to strive for equity. Focusing on demographic parity and equality of opportunity, in this paper we propose an algorithm that improves the fairness of a pre-trained classifier by simply dropping carefully selected training data points. We select instances based on their influence on the fairness metric of interest, computed using an infinitesimal jackknife-based approach. The dropping of training points is done in principle, but in practice does not require the model to be refit. Crucially, we find that such an intervention does not substantially reduce the predictive performance of the model but drastically improves the fairness metric. Through careful experiments, we evaluate the effectiveness of the proposed approach on diverse tasks and find that it consistently improves upon existing alternatives.
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Graph processing applications are severely bottlenecked by memory system performance due to low data reuse and irregular memory accesses. While state-of-the-art prefetchers using Machine Learning (ML) have made great progress, they do not perform well on graph analytics applications due to phase transitions in the execution and irregular data access that is hard to predict. We propose MPGraph: a novel ML-based Prefetcher for Graph analytics. MPGraph makes three novel optimizations based on domain knowledge of graph analytics. It detects the transition of graph processing phases during execution using a novel soft detection technique, predicts memory accesses and pages using phase-specific multi-modality predictors, and prefetches using a novel chain spatio-temporal prefetching strategy. We evaluate our approach using three widely-used graph processing frameworks and a variety of graph datasets. Our approach achieves 34.17%-82.15% higher precision in phase transition detection than the KSWIN and decision tree baselines. Our predictors achieve 6.80%-16.02% higher F1-score for access prediction and 11.68%-15.41% higher accuracy-at-10 for page prediction compared with the baselines LSTM-based and vanilla attention-based models. Simulations show that MPGraph achieves on the average 87.16% (prefetch accuracy) and 73.29% (prefetch coverage), leading to 12.52%-21.23% IPC improvement. It outperforms the widely-used non-ML prefetcher BO by 7.58%-12.03%, and outperforms state-of-the-art ML-based prefetchers Voyager by 3.27%-4.42% and TransFetch by 3.73%-4.58% with respect to IPC improvement.
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A major direction in differentially private machine learning is differentially private fine-tuning: pretraining a model on a source of "public data" and transferring the extracted features to downstream tasks. This is an important setting because many industry deployments fine-tune publicly available feature extractors on proprietary data for downstream tasks. In this paper, we use features extracted from state-of-the-art open source models to solve benchmark tasks in computer vision and natural language processing using differentially private fine-tuning. Our key insight is that by accelerating training, we can quickly drive the model parameters to regions in parameter space where the impact of noise is minimized. In doing so, we recover the same performance as non-private fine-tuning for realistic values of epsilon in [0.01, 1.0] on benchmark image classification datasets including CIFAR100.
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